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  "author": "Patricia Sobecky",
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  "author": "Patricia Sobecky",
            
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  "author_email": "psobecky@ua.edu",
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  "extras": [
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    {
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    {
            
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      "key": "DOI",
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      "key": "DOI",
            
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      "value": "doi:10.7266/4BSSB0AZ"
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      "value": "doi:10.7266/4BSSB0AZ"
            
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    {
            
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      "key": "ISO.pointOfContact",
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      "key": "ISO.pointOfContact",
            
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      "value": "Patricia Sobecky <psobecky@ua.edu>"
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      "value": "Patricia Sobecky <psobecky@ua.edu>"
            
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    },
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    {
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    {
            
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      "key": "ISO.pointOfContact.1",
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      "key": "ISO.pointOfContact.1",
            
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      "value": "Nikaela Flournoy <nyflournoy@crimson.ua.edu>"
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      "value": "Nikaela Flournoy <nyflournoy@crimson.ua.edu>"
            
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    },
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    {
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    {
            
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      "key": "Place Keywords",
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      "key": "Place Keywords",
            
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      "value": "Chandeleur Island, Louisiana, Gulf of Mexico"
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      "value": "Chandeleur Island, Louisiana, Gulf of Mexico"
            
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    },
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    },
            
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    {
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    {
            
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      "key": "Temporal Begin",
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      "key": "Temporal Begin",
            
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      "value": "2017-05-30"
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      "value": "2017-05-30"
            
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    },
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    },
            
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    {
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    {
            
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      "key": "Temporal End",
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      "key": "Temporal End",
            
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      "value": "2018-06-13"
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      "value": "2018-06-13"
            
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    },
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    },
            
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    {
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    {
            
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      "key": "Theme Keywords",
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      "key": "Theme Keywords",
            
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      "value": "16S rRNA, microbial diversity, Spartina sp., Avicennia 
32
      "value": "16S rRNA, microbial diversity, Spartina sp., Avicennia 
            
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sp., salt marsh, long-term oil exposure, smooth cordgrass, black 
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sp., salt marsh, long-term oil exposure, smooth cordgrass, black 
            
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mangrove"
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mangrove"
            
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  "maintainer": "data@disl.org",
            
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  "metadata_modified": "2022-07-27T14:38:04.145416",
            
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  "name": 
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  "name": 
            
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of-sediments-associated-with-co-occurring-avicennia-sp-and-s4bssb0az",
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of-sediments-associated-with-co-occurring-avicennia-sp-and-s4bssb0az",
            
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  "notes": "### Abstract\nAs oil was deposited differentially within 
54
  "notes": "### Abstract\nAs oil was deposited differentially within 
            
55
Chandeleur Island salt marshes, it provided the opportunity to 
55
Chandeleur Island salt marshes, it provided the opportunity to 
            
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investigate the long-term effect on the microbiology of oil-impacted 
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investigate the long-term effect on the microbiology of oil-impacted 
            
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areas containing co-occurring populations of black mangrove and smooth 
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areas containing co-occurring populations of black mangrove and smooth 
            
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cordgrass. Genomic DNA was extracted from the top 0-7cm of sediment 
58
cordgrass. Genomic DNA was extracted from the top 0-7cm of sediment 
            
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cores at five-time points over the course of 2 years (2017-2018) from 
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cores at five-time points over the course of 2 years (2017-2018) from 
            
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two salt marsh locales within the Chandeleur Islands. Microbial 
60
two salt marsh locales within the Chandeleur Islands. Microbial 
            
61
community abundance and biodiversity were characterized with 16S rRNA 
61
community abundance and biodiversity were characterized with 16S rRNA 
            
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using Illumina MiSeq 2x 250 bp technology for 60 samples. Samples data 
62
using Illumina MiSeq 2x 250 bp technology for 60 samples. Samples data 
            
63
can be accessed at the National Center for Biotechnology Information 
63
can be accessed at the National Center for Biotechnology Information 
            
64
(NCBI) under accession number PRJNA559553 
64
(NCBI) under accession number PRJNA559553 
            
65
(https://www.ncbi.nlm.nih.gov/bioproject/PRJNA559553).\n\n### 
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(https://www.ncbi.nlm.nih.gov/bioproject/PRJNA559553).\n\n### 
            
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Purpose\nPaired-end reads from replicate samples provide a 
66
Purpose\nPaired-end reads from replicate samples provide a 
            
67
comprehensive view of microbial community composition and diversity in 
67
comprehensive view of microbial community composition and diversity in 
            
68
the northern Gulf of Mexico salt marsh seven and eight years after the 
68
the northern Gulf of Mexico salt marsh seven and eight years after the 
            
69
Deepwater Horizon oil spill in sediment dominated by Spartina sp. 
69
Deepwater Horizon oil spill in sediment dominated by Spartina sp. 
            
70
(smooth cordgrass) or Avicennia germinans (black mangrove).\n\n**DOI: 
70
(smooth cordgrass) or Avicennia germinans (black mangrove).\n\n**DOI: 
            
71
[doi:10.7266/4BSSB0AZ](https://www.doi.org/10.7266/4BSSB0AZ)**\n\n### 
71
[doi:10.7266/4BSSB0AZ](https://www.doi.org/10.7266/4BSSB0AZ)**\n\n### 
            
72
Suggested Citation\nNikaela Y. Flournoy. 2019. Microbial community 
72
Suggested Citation\nNikaela Y. Flournoy. 2019. Microbial community 
            
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composition of sediments associated with co-occurring Avicennia sp. 
73
composition of sediments associated with co-occurring Avicennia sp. 
            
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and Spartina sp. in Chandeleur Island salt marsh seven and eight years 
74
and Spartina sp. in Chandeleur Island salt marsh seven and eight years 
            
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post-Deepwater Horizon from 2017-05-30 to 2018-06-13. Distributed by: 
75
post-Deepwater Horizon from 2017-05-30 to 2018-06-13. Distributed by: 
            
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Gulf of Mexico Research Initiative Information and Data Cooperative 
76
Gulf of Mexico Research Initiative Information and Data Cooperative 
            
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(GRIIDC), Harte Research Institute, Texas A&M University\u2013Corpus 
77
(GRIIDC), Harte Research Institute, Texas A&M University\u2013Corpus 
            
78
Christi. doi:10.7266/4BSSB0AZ\n\n**Funded by:** Gulf of Mexico 
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Christi. doi:10.7266/4BSSB0AZ\n\n**Funded by:** Gulf of Mexico 
            
79
Research Initiative (GoMRI)\n\n**Funding cycle:** RFP-IV\n\n**Research 
79
Research Initiative (GoMRI)\n\n**Funding cycle:** RFP-IV\n\n**Research 
            
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group:** Alabama Center for Ecological Resilience (ACER)\n\n",
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group:** Alabama Center for Ecological Resilience (ACER)\n\n",
            
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    {
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      "display_name": "16S rRNA",
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      "display_name": "16S rRNA",
            
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      "vocabulary_id": null
            
178
    },
185
    },
            
179
    {
186
    {
            
180
      "display_name": "Louisiana",
187
      "display_name": "Louisiana",
            
181
      "id": "d7699c97-9202-4624-bb36-265d2a628a57",
188
      "id": "d7699c97-9202-4624-bb36-265d2a628a57",
            
182
      "name": "Louisiana",
189
      "name": "Louisiana",
            
183
      "state": "active",
190
      "state": "active",
            
184
      "vocabulary_id": null
191
      "vocabulary_id": null
            
185
    },
192
    },
            
186
    {
193
    {
            
187
      "display_name": "Spartina sp.",
194
      "display_name": "Spartina sp.",
            
188
      "id": "1835055f-23b1-41b0-92ea-ca953e4de53b",
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      "id": "1835055f-23b1-41b0-92ea-ca953e4de53b",
            
189
      "name": "Spartina sp.",
196
      "name": "Spartina sp.",
            
190
      "state": "active",
197
      "state": "active",
            
191
      "vocabulary_id": null
198
      "vocabulary_id": null
            
192
    },
199
    },
            
193
    {
200
    {
            
194
      "display_name": "black mangrove",
201
      "display_name": "black mangrove",
            
195
      "id": "c8859420-6c8e-45c2-bcc0-ab705486a70b",
202
      "id": "c8859420-6c8e-45c2-bcc0-ab705486a70b",
            
196
      "name": "black mangrove",
203
      "name": "black mangrove",
            
197
      "state": "active",
204
      "state": "active",
            
198
      "vocabulary_id": null
205
      "vocabulary_id": null
            
199
    },
206
    },
            
200
    {
207
    {
            
201
      "display_name": "long-term oil exposure",
208
      "display_name": "long-term oil exposure",
            
202
      "id": "16757d03-8ba3-4ebd-aa57-723ed06cd1b3",
209
      "id": "16757d03-8ba3-4ebd-aa57-723ed06cd1b3",
            
203
      "name": "long-term oil exposure",
210
      "name": "long-term oil exposure",
            
204
      "state": "active",
211
      "state": "active",
            
205
      "vocabulary_id": null
212
      "vocabulary_id": null
            
206
    },
213
    },
            
207
    {
214
    {
            
208
      "display_name": "microbial diversity",
215
      "display_name": "microbial diversity",
            
209
      "id": "7bd6b977-facd-46c7-8489-5306f2cc0201",
216
      "id": "7bd6b977-facd-46c7-8489-5306f2cc0201",
            
210
      "name": "microbial diversity",
217
      "name": "microbial diversity",
            
211
      "state": "active",
218
      "state": "active",
            
212
      "vocabulary_id": null
219
      "vocabulary_id": null
            
213
    },
220
    },
            
214
    {
221
    {
            
215
      "display_name": "salt marsh",
222
      "display_name": "salt marsh",
            
216
      "id": "5c257f3f-a48e-47b6-a1cc-4113dc5cea33",
223
      "id": "5c257f3f-a48e-47b6-a1cc-4113dc5cea33",
            
217
      "name": "salt marsh",
224
      "name": "salt marsh",
            
218
      "state": "active",
225
      "state": "active",
            
219
      "vocabulary_id": null
226
      "vocabulary_id": null
            
220
    },
227
    },
            
221
    {
228
    {
            
222
      "display_name": "smooth cordgrass",
229
      "display_name": "smooth cordgrass",
            
223
      "id": "01756e0b-0bc0-4d71-a0ce-c52067625d1e",
230
      "id": "01756e0b-0bc0-4d71-a0ce-c52067625d1e",
            
224
      "name": "smooth cordgrass",
231
      "name": "smooth cordgrass",
            
225
      "state": "active",
232
      "state": "active",
            
226
      "vocabulary_id": null
233
      "vocabulary_id": null
            
227
    }
234
    }
            
228
  ],
235
  ],
            
229
  "title": "Microbial community composition of sediments associated 
236
  "title": "Microbial community composition of sediments associated 
            
230
with co-occurring Avicennia sp. and Spartina sp. in Chandeleur Island 
237
with co-occurring Avicennia sp. and Spartina sp. in Chandeleur Island 
            
231
salt marsh seven and eight years post-Deepwater Horizon from 
238
salt marsh seven and eight years post-Deepwater Horizon from 
            
232
2017-05-30 to 2018-06-13",
239
2017-05-30 to 2018-06-13",
            
233
  "type": "dataset",
240
  "type": "dataset",
            
234
  "url": null,
241
  "url": null,
            
235
  "version": null
242
  "version": null
            
236
}
243
}